Publications (69) Jorge González Domínguez publications

2024

  1. Applying dynamic balancing to improve the performance of MPI parallel genomics applications

    Proceedings of the ACM Symposium on Applied Computing

  2. BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction

    Future Generation Computer Systems, Vol. 154, pp. 314-329

  3. CUDA acceleration of MI-based feature selection methods

    Journal of Parallel and Distributed Computing, Vol. 190

  4. PARamrfinder: detecting allele-specific DNA methylation on multicore clusters

    Journal of Supercomputing, Vol. 80, Núm. 10, pp. 14573-14599

  5. bioScience: A new python science library for high-performance computing bioinformatics analytics

    SoftwareX, Vol. 26

2023

  1. Influence of face-to-face in hybrid teaching: A case of study for a master

    Iberian Conference on Information Systems and Technologies, CISTI

  2. PATO: genome-wide prediction of lncRNA-DNA triple helices

    Bioinformatics (Oxford, England), Vol. 39, Núm. 3

  3. ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 20, Núm. 3, pp. 2041-2049

  4. Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction

    Proceedings of the ACM Symposium on Applied Computing

  5. pRIblast: A highly efficient parallel application for comprehensive lncRNA–RNA interaction prediction

    Future Generation Computer Systems, Vol. 138, pp. 270-279

2022

  1. A SIMD algorithm for the detection of epistatic interactions of any order

    Future Generation Computer Systems, Vol. 132, pp. 108-123

  2. Evaluation of Existing Methods for High-Order Epistasis Detection

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 19, Núm. 2, pp. 912-926

  3. Fiuncho: a program for any-order epistasis detection in CPU clusters

    Journal of Supercomputing, Vol. 78, Núm. 13, pp. 15338-15357

  4. MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters

    Journal of Supercomputing, Vol. 78, Núm. 3, pp. 4217-4235

  5. Parallel-FST: A feature selection library for multicore clusters

    Journal of Parallel and Distributed Computing, Vol. 169, pp. 106-116

  6. PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models

    BMC Bioinformatics, Vol. 23, Núm. 1

2021

  1. A Parallel Tool for the Identification of Differentially Methylated Regions in Genomic Analyses †

    Engineering Proceedings, Vol. 7, Núm. 1

  2. Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI

    Methods in molecular biology (Clifton, N.J.), Vol. 2231, pp. 39-47

  3. ScalaParBiBit: scaling the binary biclustering in distributed-memory systems

    Cluster Computing, Vol. 24, Núm. 3, pp. 2249-2268

2020

  1. CUDA-JMI: Acceleration of feature selection on heterogeneous systems

    Future Generation Computer Systems, Vol. 102, pp. 426-436