Publications in collaboration with researchers from Instituto de Investigacións Mariñas (19)

2020

  1. A two-dimensional multi-species model for different Listeria monocytogenes biofilm structures and its numerical simulation

    Applied Mathematics and Computation, Vol. 384

  2. Spark implementation of the enhanced Scatter Search metaheuristic: Methodology and assessment

    Swarm and Evolutionary Computation, Vol. 59

2019

  1. Transient hysteresis and inherent stochasticity in gene regulatory networks

    Nature Communications, Vol. 10, Núm. 1

2018

  1. Efficient simulation of stochastic gene regulatory networks⁎

    7th Conference on Foundation of Systems Biology in Engineering FOSBE 2018: Chicago, Illinois, USA, 05-08 August 2018

  2. Multimethod optimization in the cloud: A case-study in systems biology modelling

    Concurrency Computation , Vol. 30, Núm. 12

  3. Numerical analysis of a method for a partial integro-differential equation model in regulatory gene networks

    Mathematical Models and Methods in Applied Sciences, Vol. 28, Núm. 10, pp. 2069-2095

  4. SELANSI: A toolbox for simulation of stochastic gene regulatory networks

    Bioinformatics, Vol. 34, Núm. 5, pp. 893-895

2017

  1. A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology

    Cluster Computing, Vol. 20, Núm. 3, pp. 1937-1950

  2. A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology

    PLoS ONE, Vol. 12, Núm. 8

  3. Evaluation of parallel differential evolution implementations on MapReduce and spark

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  4. Modeling reveals the role of aging and glucose uptake impairment in L1A1 Listeria monocytogenes biofilm life cycle

    Frontiers in Microbiology, Vol. 8, Núm. NOV

  5. Numerical methods for a nonlinear reaction–diffusion system modelling a batch culture of biofilm

    Applied Mathematical Modelling, Vol. 41, pp. 164-179

  6. Parameter estimation in large-scale systems biology models: A parallel and self-adaptive cooperative strategy

    BMC Bioinformatics, Vol. 18, Núm. 1

  7. Stochastic modeling and numerical simulation of gene regulatory networks with protein bursting

    Journal of Theoretical Biology, Vol. 421, pp. 51-70

2016

  1. Modeling and optimization techniques with applications in food processes, bio-processes and bio-systems

    SEMA SIMAI Springer Series (Springer International Publishing), pp. 187-216

  2. Stability of stochastic gene regulatory networks using entropy methods

    IFAC-PapersOnLine

2015

  1. Enhanced parallel differential evolution algorithm for problems in computational systems biology

    Applied Soft Computing Journal, Vol. 33, pp. 86-99

  2. Parallel metaheuristics in computational biology: An asynchronous Cooperative enhanced Scatter Search method

    Procedia Computer Science

  3. Shaping protein distributions in stochastic self-regulated gene expression networks

    Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, Vol. 92, Núm. 3