Publications by the researcher in collaboration with Jorge González Domínguez (26)

2024

  1. CUDA acceleration of MI-based feature selection methods

    Journal of Parallel and Distributed Computing, Vol. 190

2023

  1. PATO: genome-wide prediction of lncRNA-DNA triple helices

    Bioinformatics (Oxford, England), Vol. 39, Núm. 3

  2. ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 20, Núm. 3, pp. 2041-2049

  3. Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction

    Proceedings of the ACM Symposium on Applied Computing

  4. pRIblast: A highly efficient parallel application for comprehensive lncRNA–RNA interaction prediction

    Future Generation Computer Systems, Vol. 138, pp. 270-279

2022

  1. Parallel-FST: A feature selection library for multicore clusters

    Journal of Parallel and Distributed Computing, Vol. 169, pp. 106-116

2021

  1. A Parallel Tool for the Identification of Differentially Methylated Regions in Genomic Analyses †

    Engineering Proceedings, Vol. 7, Núm. 1

2020

  1. SMusket: Spark-based DNA error correction on distributed-memory systems

    Future Generation Computer Systems, Vol. 111, pp. 698-713

2019

  1. Parallel feature selection for distributed-memory clusters

    Information Sciences, Vol. 496, pp. 399-409

2018

  1. HSRA: Hadoop-based spliced read aligner for RNA sequencing data

    PLoS ONE, Vol. 13, Núm. 7

2017

  1. MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud

    Bioinformatics (Oxford, England), Vol. 33, Núm. 17, pp. 2762-2764

2016

  1. MSAProbs-MPI: Parallel multiple sequence aligner for distributed-memory systems

    Bioinformatics, Vol. 32, Núm. 24, pp. 3826-3828

  2. Multithreaded and Spark parallelization of feature selection filters

    Journal of Computational Science, Vol. 17, pp. 609-619

  3. Parallel pairwise epistasis detection on heterogeneous computing architectures

    IEEE Transactions on Parallel and Distributed Systems, Vol. 27, Núm. 8, pp. 2329-2340

2014

  1. A 2D algorithm with asymmetric workload for the UPC conjugate gradient method

    Journal of Supercomputing, Vol. 70, Núm. 2, pp. 816-829

2013

  1. Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform

    Journal of Grid Computing, Vol. 11, Núm. 4, pp. 613-631

  2. Performance evaluation of sparse matrix products in UPC

    Journal of Supercomputing

  3. The Servet 3.0 benchmark suite: Characterization of network performance degradation

    Computers and Electrical Engineering

2012

  1. Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite

    Computers and Electrical Engineering, Vol. 38, Núm. 2, pp. 258-269

  2. Communication Avoiding and Overlapping for Numerical Linear Algebra

    2012 INTERNATIONAL CONFERENCE FOR HIGH PERFORMANCE COMPUTING, NETWORKING, STORAGE AND ANALYSIS (SC)