Publicaciones (94) Publicaciones de María José Martín Santamaría

2024

  1. PARamrfinder: detecting allele-specific DNA methylation on multicore clusters

    Journal of Supercomputing

2023

  1. GUANIN: GUi-driven Analyzer for NanoString Interactive Normalization

    VI Congreso XoveTIC: impulsando el talento científico

2022

  1. A SIMD algorithm for the detection of epistatic interactions of any order

    Future Generation Computer Systems, Vol. 132, pp. 108-123

  2. Evaluation of Existing Methods for High-Order Epistasis Detection

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 19, Núm. 2, pp. 912-926

  3. Fiuncho: a program for any-order epistasis detection in CPU clusters

    Journal of Supercomputing, Vol. 78, Núm. 13, pp. 15338-15357

  4. PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models

    BMC Bioinformatics, Vol. 23, Núm. 1

2020

  1. Fast search of third-order epistatic interactions on CPU and GPU clusters

    International Journal of High Performance Computing Applications, Vol. 34, Núm. 1, pp. 20-29

  2. Fault tolerance of MPI applications in exascale systems: The ULFM solution

    Future Generation Computer Systems, Vol. 106, pp. 467-481

  3. Toxo: A library for calculating penetrance tables of high-order epistasis models

    BMC Bioinformatics, Vol. 21, Núm. 1

2019

  1. Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  2. Enhanced global optimization methods applied to complex fisheries stock assessment models

    Applied Soft Computing Journal, Vol. 77, pp. 50-66

  3. Local rollback for resilient MPI applications with application-level checkpointing and message logging

    Future Generation Computer Systems, Vol. 91, pp. 450-464

  4. Nuevas tendencias en tolerancia a fallos para aplicaciones paralelas

    Avances en Arquitectura y Tecnología de Computadores: Actas de Jornadas SARTECO, Cáceres, 18 a 20 de septiembre de 2019| (Servicio de Publicaciones), pp. 2-3

2018

  1. Insights into application-level solutions towards resilient MPI applications

    Proceedings - 2018 International Conference on High Performance Computing and Simulation, HPCS 2018

  2. MPIGeneNet: Parallel calculation of gene co-expression networks on multicore clusters

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 15, Núm. 5, pp. 1732-1737

2017

  1. A portable and adaptable fault tolerance solution for heterogeneous applications

    Journal of Parallel and Distributed Computing, Vol. 104, pp. 146-158

  2. An application-level solution for the dynamic reconfiguration of mpi applications

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  3. Assessing resilient versus stop-and-restart fault-tolerant solutions in MPI applications

    Journal of Supercomputing, Vol. 73, Núm. 1, pp. 316-329

  4. Evaluation of openmp SIMD directives on XEON PHI coprocessors

    Proceedings - 2017 International Conference on High Performance Computing and Simulation, HPCS 2017

  5. Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters

    Procedia Computer Science