María José
Martín Santamaría
Catedrática de Universidad
Publicaciones (97) Publicaciones de María José Martín Santamaría
2024
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Applying dynamic balancing to improve the performance of MPI parallel genomics applications
Proceedings of the ACM Symposium on Applied Computing
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GUANIN: an all-in-one GUi-driven analyzer for NanoString interactive normalization
Bioinformatics, Vol. 40, Núm. 8
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PARamrfinder: detecting allele-specific DNA methylation on multicore clusters
Journal of Supercomputing, Vol. 80, Núm. 10, pp. 14573-14599
2023
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Clupiter: a Raspberry Pi mini-supercomputer for educational purposes
Proceedings - 2023 IEEE 22nd International Conference on Trust, Security and Privacy in Computing and Communications, TrustCom/BigDataSE/CSE/EUC/iSCI 2023
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GUANIN: GUi-driven Analyzer for NanoString Interactive Normalization
VI Congreso XoveTIC: impulsando el talento científico
2022
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A SIMD algorithm for the detection of epistatic interactions of any order
Future Generation Computer Systems, Vol. 132, pp. 108-123
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Evaluation of Existing Methods for High-Order Epistasis Detection
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 19, Núm. 2, pp. 912-926
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Fiuncho: a program for any-order epistasis detection in CPU clusters
Journal of Supercomputing, Vol. 78, Núm. 13, pp. 15338-15357
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PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models
BMC Bioinformatics, Vol. 23, Núm. 1
2020
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Fast search of third-order epistatic interactions on CPU and GPU clusters
International Journal of High Performance Computing Applications, Vol. 34, Núm. 1, pp. 20-29
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Fault tolerance of MPI applications in exascale systems: The ULFM solution
Future Generation Computer Systems, Vol. 106, pp. 467-481
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Toxo: A library for calculating penetrance tables of high-order epistasis models
BMC Bioinformatics, Vol. 21, Núm. 1
2019
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Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
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Enhanced global optimization methods applied to complex fisheries stock assessment models
Applied Soft Computing Journal, Vol. 77, pp. 50-66
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Local rollback for resilient MPI applications with application-level checkpointing and message logging
Future Generation Computer Systems, Vol. 91, pp. 450-464
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Nuevas tendencias en tolerancia a fallos para aplicaciones paralelas
Avances en Arquitectura y Tecnología de Computadores: Actas de Jornadas SARTECO, Cáceres, 18 a 20 de septiembre de 2019| (Servicio de Publicaciones), pp. 2-3
2018
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Insights into application-level solutions towards resilient MPI applications
Proceedings - 2018 International Conference on High Performance Computing and Simulation, HPCS 2018
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MPIGeneNet: Parallel calculation of gene co-expression networks on multicore clusters
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 15, Núm. 5, pp. 1732-1737
2017
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A portable and adaptable fault tolerance solution for heterogeneous applications
Journal of Parallel and Distributed Computing, Vol. 104, pp. 146-158
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An application-level solution for the dynamic reconfiguration of mpi applications
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)