Publications by the researcher in collaboration with María José Martín Santamaría (25)

2024

  1. Applying dynamic balancing to improve the performance of MPI parallel genomics applications

    Proceedings of the ACM Symposium on Applied Computing

  2. PARamrfinder: detecting allele-specific DNA methylation on multicore clusters

    Journal of Supercomputing, Vol. 80, Núm. 10, pp. 14573-14599

2022

  1. A SIMD algorithm for the detection of epistatic interactions of any order

    Future Generation Computer Systems, Vol. 132, pp. 108-123

  2. Additional file 1 of PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models

    figshare

  3. Additional file 1 of PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models

    figshare

  4. Evaluation of Existing Methods for High-Order Epistasis Detection

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 19, Núm. 2, pp. 912-926

  5. Fiuncho: a program for any-order epistasis detection in CPU clusters

    Journal of Supercomputing, Vol. 78, Núm. 13, pp. 15338-15357

  6. PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models

    BMC Bioinformatics, Vol. 23, Núm. 1

2020

  1. Fast search of third-order epistatic interactions on CPU and GPU clusters

    International Journal of High Performance Computing Applications, Vol. 34, Núm. 1, pp. 20-29

  2. Toxo: A library for calculating penetrance tables of high-order epistasis models

    BMC Bioinformatics, Vol. 21, Núm. 1

2019

  1. Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

2018

  1. MPIGeneNet: Parallel calculation of gene co-expression networks on multicore clusters

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 15, Núm. 5, pp. 1732-1737

2017

  1. Evaluation of openmp SIMD directives on XEON PHI coprocessors

    Proceedings - 2017 International Conference on High Performance Computing and Simulation, HPCS 2017

  2. Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters

    Procedia Computer Science

  3. Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis

    Computer Methods and Programs in Biomedicine, Vol. 139, pp. 51-60

2016

  1. Acceleration of tear film map definition on multicore systems

    Procedia Computer Science

2014

  1. A 2D algorithm with asymmetric workload for the UPC conjugate gradient method

    Journal of Supercomputing, Vol. 70, Núm. 2, pp. 816-829

2013

  1. Performance evaluation of sparse matrix products in UPC

    Journal of Supercomputing

  2. The Servet 3.0 benchmark suite: Characterization of network performance degradation

    Computers and Electrical Engineering

2012

  1. Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite

    Computers and Electrical Engineering, Vol. 38, Núm. 2, pp. 258-269