Publicaciones (18) Publicaciones de Diego Darriba López

2021

  1. The wall lizards of the Balkan peninsula: Tackling questions at the interface of phylogenomics and population genomics

    Molecular Phylogenetics and Evolution, Vol. 159

2020

  1. ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

    Molecular Biology and Evolution, Vol. 37, Núm. 1, pp. 291-294

2019

  1. EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

    Systematic Biology, Vol. 68, Núm. 2, pp. 365-369

  2. RAxML-NG: A fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

    Bioinformatics, Vol. 35, Núm. 21, pp. 4453-4455

2018

  1. Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system

    Molecular Phylogenetics and Evolution, Vol. 125, pp. 100-115

  2. The state of software for evolutionary biology

    Molecular Biology and Evolution, Vol. 35, Núm. 5, pp. 1037-1046

2016

  1. Adapting reproducible research capabilities to resilient distributed calculations

    International Journal of Grid and High Performance Computing, Vol. 8, Núm. 1, pp. 58-69

  2. Does the choice of nucleotide substitution models matter topologically?

    BMC Bioinformatics, Vol. 17, Núm. 1

  3. Prediction of missing sequences and branch lengths in phylogenomic data

    Bioinformatics, Vol. 32, Núm. 9, pp. 1331-1337

2015

  1. The phylogenetic likelihood library

    Systematic Biology, Vol. 64, Núm. 2, pp. 356-362

2014

  1. A Fault Tolerant Workflow for Reproducible Research

    Proceedings - 2014 Annual Global Online Conference on Information and Computer Technology, GOCICT 2014

  2. High-performance computing selection of models of DNA substitution for multicore clusters

    International Journal of High Performance Computing Applications, Vol. 28, Núm. 1, pp. 112-125

  3. Jmodeltest.org: Selection of nucleotide substitution models on the cloud

    Bioinformatics, Vol. 30, Núm. 9, pp. 1310-1311

2013

  1. Boosting the performance of bayesian divergence time estimation with the phylogenetic likelihood library

    Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium Workshops and PhD Forum, IPDPSW 2013

2012

  1. JModelTest 2: More models, new heuristics and parallel computing

    Nature Methods

2011

  1. HPC selection of models of DNA substitution

    Proceedings of the 9th International Conference on Computational Methods in Systems Biology, CMSB'11

  2. ProtTest 3: Fast selection of best-fit models of protein evolution

    Bioinformatics, Vol. 27, Núm. 8, pp. 1164-1165

  3. ProtTest-HPC: Fast selection of best-fit models of protein evolution

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)